rs223731411 SNP Detail

Summary

• ID
  rs223731411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66825097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTTCGA GAAGGGAGAT
  GACATTTAAA ATCTGCTTCC TCAGAAAAGT CCCACTCAAG ACTAACTGCC AAGAACTCGC
  AACTCAAACT TCCTTCAGCC CAGATATCAC AACACCCAAA TTTCCATTCA GTCTGTAGGA
  AAAAAAAAAA TCAGAATAAA CCATGGAGAC TCTTTACCAA TACTTACACT GGAAAGTGCT
  Y
  GATACCTACT TTTAAAATGT CACCTATTTT CAAATGCCAC AAATATTTAA ACACGGATTT
  TGTTTTGTTT TTAATTCAAG GTTTTTTTCC TGCATAAATG TATGTACACC ATGTAAATGT
  CTAGTCCCCA CGGAGGCCAG AAGAGGGTGT TGTATTCCAT TAGAATTACA GGCAGTATGA
  GGTGCCAAGT GAGTGCTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377893170	MGP_WTSI_9_66765622	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223731411					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377893170	MGP_WTSI_9_66765622	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66825097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21974	CpG island 21974	1203 bp proximal
Rab8b	RAB8B, member RAS oncogene family	within coordinates
Rr368814	regulatory region 368814	1588 bp upstream
Rr401489	regulatory region 401489	1858 bp upstream
Rr681811	regulatory region 681811	781 bp distal
Rr681812	regulatory region 681812	147 bp distal
Rr681813	regulatory region 681813	133 bp proximal
Rr681814	regulatory region 681814	1862 bp proximal
Tssr85773	transcription start site region 85773	1023 bp upstream
Tssr85774	transcription start site region 85774	1050 bp upstream
Tssr90293	transcription start site region 90293	1205 bp upstream
Tssr90294	transcription start site region 90294	525 bp downstream
Tssr90295	transcription start site region 90295	1351 bp downstream
Tssr90296	transcription start site region 90296	1831 bp downstream