rs223732936 SNP Detail

Summary

• ID
  rs223732936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129445534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTCCTC ATACGCACAC
  CTGAAGGTCT GTCTCCCAGC TCTTCCAGTT GGTTCTAAAT CTAGTCAAGT TGACAGTGAC
  AGTGAACTGC TGCAAAGTGC TAGAGGGCAG GCGAGGAAGC ACAGGTGACA TAGTGACCCA
  ATGGAGGGGT GGCCTGCTGC TGTGGTAGGG GTTAGGAAGG GGGTAGCCTA GTGCTGTGGT
  R
  GTGGCTAGGG AGGGGGTGGC CTGCTGCTGC TGCTGTGGTG GTGGCTAGGG AGGGGTGGCC
  TGATGCTGTG GTGGTGGCTA GGGAGGGGGT AGCCTGATGC TGTGGTGGTG GCTAGGGAGG
  GGTGGCCTGC TGCTGTGCTG AGGGTGAGGG TTATTGGGGT TCTTGGGATG AGGAGCTCTG
  ACTGTTGCTA TGGTTTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355642719	MGP_WTSI_2_129429350	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs223732936					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355642719	MGP_WTSI_2_129429350	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129445534 () rs orientation: forward

Symbol	Name	Function Class
Rr564956	regulatory region 564956	within coordinates
Rr564957	regulatory region 564957	455 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20145	transcription start site region 20145	1397 bp downstream
Tssr20146	transcription start site region 20146	116 bp upstream