rs223734746 SNP Detail

Summary

• ID
  rs223734746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:44381761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTTTAAG ATAATAGGAA
  AGATGAGCTG GAGAGTTGGC TCAGCTAAGT GTACTTAGTG TTTGTCCCGT GGACCCAGGT
  TTGGCTCCCA GCACTCACAT GAAGTGGCTC ACAACCATCC GTAACTCTAG TTTCATGGGA
  CCCATCACCT CTGGCCTTTG GTGGTATCTG CACTCATGTG CACATACCCA CTTGCACTCT
  Y
  GTGTGCTTGT GCACCCCCCC CACAACTAAA AATAATAAAA ATAAAAATTT TTAAAGATAT
  ATTTATTTTA TGTATGTGAA CACACTGTTG CTCTCTCCAT ACACACCAGA AGAGGGCATC
  ACAGATGGCT GTGAGCCACC GTATGGCTGC TGGGAATTGA ACTCAGGACC TCTGGAAGAG
  CAGTCAGCGC TCACCCTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100995	CHEV_4_44394633	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223734746					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44381761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14212	CpG island 14212	997 bp distal
Gm12455	predicted gene 12455	1161 bp upstream
Gm68903	predicted gene, 68903	within coordinates
Rr89080	regulatory region 89080	40 bp proximal