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rs223734746 SNP Detail
Summary
  • ID
    rs223734746
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:44381761 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACCTTTAAG ATAATAGGAA
    AGATGAGCTG GAGAGTTGGC TCAGCTAAGT GTACTTAGTG TTTGTCCCGT GGACCCAGGT
    TTGGCTCCCA GCACTCACAT GAAGTGGCTC ACAACCATCC GTAACTCTAG TTTCATGGGA
    CCCATCACCT CTGGCCTTTG GTGGTATCTG CACTCATGTG CACATACCCA CTTGCACTCT
    Y
    GTGTGCTTGT GCACCCCCCC CACAACTAAA AATAATAAAA ATAAAAATTT TTAAAGATAT
    ATTTATTTTA TGTATGTGAA CACACTGTTG CTCTCTCCAT ACACACCAGA AGAGGGCATC
    ACAGATGGCT GTGAGCCACC GTATGGCTGC TGGGAATTGA ACTCAGGACC TCTGGAAGAG
    CAGTCAGCGC TCACCCTCAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321100995 CHEV_4_44394633 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs223734746 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:44381761 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi14212 CpG island 14212 997 bp distal
Gm12455 predicted gene 12455 1161 bp upstream
Gm68903 predicted gene, 68903 within coordinates
Rr89080 regulatory region 89080 40 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory