rs223739183 SNP Detail

Summary

• ID
  rs223739183
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27952274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG TTTAAGCCTC TGCCTCCCAC
  R
  AGGCTTTACA ACTTTTCTGG TTAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323281674	CHEV_10_27796084	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223739183					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27952274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1406	CpG island 1406	702 bp distal
Cpgi1407	CpG island 1407	within coordinates
Ptprk	protein tyrosine phosphatase receptor type K	within coordinates
Rr214336	regulatory region 214336	1927 bp proximal
Rr224630	regulatory region 224630	within coordinates
Tssr92814	transcription start site region 92814	1405 bp downstream
Tssr92815	transcription start site region 92815	1351 bp downstream
Tssr92816	transcription start site region 92816	1341 bp downstream