rs223740849 SNP Detail

Summary

• ID
  rs223740849
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:153567567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGCCGC CCGCGCCGCT
  CGGCCGCCTC CCTCTGCGCG TCTGCCTCCA GAAGCGCTTG CCCCCGCCTC CGCGAACGGG
  TCCCAACTCC GCCCGCCGGG CCCGGCTCAC GTCACCCTCC TTCCCCGCCC CTCAACCTGG
  AGTCGGAGCC CCCAACCCGG CCGGTCGGCT TAGCTTGCCA GCCCACCTCG CTGGAGCTGG
  M
  CTGGCGACCT GGGCTCTGAG TGGCCTGGGC GGCGCCAGAG AGAAGAACCG GGCCCACCCC
  TTCCCCATCC CTGGCCGCGT CCGGGTCTCC ACCTTGGGAA AGGCTCGAAA GAGGCCGCAG
  GCTCCGATTG GACCGCCCGG CGCCGCCGGA TGGTGTTGCC ACGGTAACCA GATGGCATGC
  GAAGCAGTTA AGAGGTTCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363742889	MGP_WTSI_4_152857219	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223740849					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363742889	MGP_WTSI_4_152857219	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:153567567 () rs orientation: forward

Symbol	Name	Function Class
Ajap1	adherens junction associated protein 1	299 bp upstream
Cpgi15423	CpG island 15423	within coordinates
Gm69122	predicted gene, 69122	within coordinates
Rr605998	regulatory region 605998	310 bp distal
Rr605999	regulatory region 605999	21 bp distal
Rr606000	regulatory region 606000	within coordinates
Rr606001	regulatory region 606001	1486 bp proximal
Tssr44844	transcription start site region 44844	323 bp upstream
Tssr44845	transcription start site region 44845	138 bp upstream
Tssr44846	transcription start site region 44846	861 bp downstream