rs223743984 SNP Detail

Summary

• ID
  rs223743984
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100826002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC TCAGGTTTCA AATATAAATT
  T
  TTTGAATATT CAAAATCAAA ATGCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321627446	CHEV_5_101107155	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223743984					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100826002 () rs orientation: forward

Symbol	Name	Function Class
Gm15777	predicted gene 15777	within coordinates
Hpse	heparanase	1348 bp downstream
Rr378347	regulatory region 378347	1380 bp upstream
Rr615545	regulatory region 615545	1700 bp proximal
Tssr52114	transcription start site region 52114	1933 bp downstream