rs223746209 SNP Detail

Summary

• ID
  rs223746209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118265971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGTATCT TTGCATGGCA
  TGACACCTCA CCTGCTCTGA CTTCAGTTGT CTGCTCTGTA CATGACAATA AATACTGCCA
  GATTCCCTGC TGGAGTCTGA ATGTCAAAAC ATACATATAG GGTTCTTTGC ATCTAGGGGG
  TGGGGGGTGG GGTGGGGGGG CGGGTGCCTC GTCTGCCTTT TCTGCCTTAA CTTGTGATCC
  Y
  CAAGCCACAT CACAGAACAA ATACTTTTAT AAAGAAGGAA GCAGGGTCTG TCCTAAGTTA
  AGACTGGCCA GAGGGTTGTA GGGCTTTGCC AAGAGCACGA ACGCTAGAGC GAAATCAACT
  CATGCTATTG ATTGCATTCC AATAGATGAG ATACAAAAAA CCCCGCAAAG TCGGTCAGCT
  TCGGCGTGGC ACAATGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321283064	CHEV_4_118081379	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223746209					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118265971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14683	CpG island 14683	106 bp proximal
Med8	mediator complex subunit 8	563 bp upstream
Rr398422	regulatory region 398422	386 bp upstream
Rr598388	regulatory region 598388	26 bp proximal
Rr598389	regulatory region 598389	489 bp proximal
Rr598390	regulatory region 598390	603 bp proximal
Szt2	SZT2 subunit of KICSTOR complex	within coordinates
Tssr1279	transcription start site region 1279	611 bp upstream
Tssr38654	transcription start site region 38654	557 bp upstream
Tssr43049	transcription start site region 43049	445 bp downstream