rs223748346 SNP Detail

Summary

• ID
  rs223748346
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40286380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTCAATGA AGGTAGGCTG CATTCCTGCA
  GAGCGCTTCC CCAAGCTctc ctcctcctcc tcctcctcct cctcctcctc ctcctcctcc
  tcctcctcct cctccCTCCA CCCTCTTCAA GGAGTTAAAG CGCCCTCCCT GCCTAACCCC
  S
  GGAGCCTTTC TCCCTTTCTC CTCCTAGGCA GCTGCACAGG CCACCCTGCG GGGGTACCAG
  ATTCCTGGTA GGACAAAGTT TTCCTAACAA AAAACAAAAA ATCTGCAGTT TCTTTCTCAA
  GCAGACAAAA AAGGCAGTTC CCCCACCCAT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322915612	CHEV_9_40182669	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223748346					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40286380 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	867 bp proximal
Rr676806	regulatory region 676806	1173 bp proximal
Rr676807	regulatory region 676807	1224 bp proximal
Rr676808	regulatory region 676808	1327 bp proximal
Tssr88904	transcription start site region 88904	1037 bp downstream
Tssr88905	transcription start site region 88905	1129 bp downstream
Tssr88906	transcription start site region 88906	1248 bp downstream
Tssr88907	transcription start site region 88907	1275 bp downstream
Tssr88908	transcription start site region 88908	1342 bp downstream
Tssr88909	transcription start site region 88909	1746 bp downstream