rs223748510 SNP Detail

Summary

• ID
  rs223748510
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69493682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCCTCC TCCATCCTCC
  CCGGGAGACC AATATCATGG GTACCCGATT CATTTTGATG AAGACACAGG GCTGCCCGGT
  GCTGTAACCA TAGTGGGTAG GGTCCCCAAT GCCAGAGCAA TCGCCCAGTT GGGTCCGGTT
  GAACTGGCAG GCACGTTTTG GGTAGTTCAG AACCCCATTA TCAGGTTGCT CATAATATCG
  Y
  CCTGGACGGC AGACATCATT CTTCTGTGCT TGGATGGAGT CGTTGTAAGC TAGGAGGTGG
  GAGGCAGACA GAGAAGGTCA GAGGCCAAAT GTCTCACTTC CAGGGTCCTG GATTCCTTCC
  CCCAAGGTCC TGGACTAGCC CCACACTCAC GTTCCAAGAA CTTGTTGAGC TTCTGAACAT
  GCTGACCCCA GCTTTCAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787340	MGP_WTSI_11_69416358	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223748510					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787340	MGP_WTSI_11_69416358	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69493682 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Cpgi3137	CpG island 3137	1835 bp proximal
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	1400 bp downstream
Rr450036	regulatory region 450036	1499 bp proximal
Tssr102488	transcription start site region 102488	1653 bp downstream
Tssr102489	transcription start site region 102489	1607 bp downstream
Tssr108725	transcription start site region 108725	1993 bp upstream
Tssr108726	transcription start site region 108726	1891 bp upstream
Tssr108727	transcription start site region 108727	1870 bp upstream
Tssr108728	transcription start site region 108728	1826 bp upstream
Tssr108729	transcription start site region 108729	1741 bp upstream
Tssr108730	transcription start site region 108730	1709 bp upstream
Tssr108731	transcription start site region 108731	1667 bp upstream
Tssr108732	transcription start site region 108732	1606 bp upstream
Tssr108733	transcription start site region 108733	391 bp upstream
Tssr108734	transcription start site region 108734	73 bp upstream
Tssr108735	transcription start site region 108735	24 bp upstream
Tssr108736	transcription start site region 108736	within coordinates
Tssr108737	transcription start site region 108737	682 bp downstream