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rs223761028 SNP Detail
Summary
  • ID
    rs223761028
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:93352610 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGGGATGAAG ATCAGCGCAG
GGATCTGAAA TGGCAGTGGC AACCAAGGAA AGAAAATGAA GTTCGTAGTA ACAGGCTCTT
CACCAAACGC AGAGGGGATG AGGAACCCAT CCAGCAGCTG GAAGATTCTC AGGAGCGAGA
GAGACGTCAG GATCGGCGGC CTCTGCAAGA CGAAGAGGAA GAGAAGAGAG AGCTGGAGCA
R
GAGAGGAGGC GTCGACAGCA GCGCGACCGT CAGATCCTAG AGGAAGAGCA GTTTCAGCGA
GAGCACCAAC GGGAAGCCAG AAGACGAGAT GAGACGTTCC AGGAGGAAGA ACAGCTCCAG
GGAGAATCGA GAAGACGGCA ACAGGAGAGA GAGGGCAAGT TCCTTGAGGA GGAAAGGCAG
CTGCGGACAG AACGGGAAGA                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876334 MGP_WTSI_3_93249225 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223761028 SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876334 MGP_WTSI_3_93249225 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93352610 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 509 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 1873 bp downstream
Tssr961 transcription start site region 961 1297 bp downstream
Tssr962 transcription start site region 962 177 bp downstream
Tssr963 transcription start site region 963 141 bp downstream
Tssr964 transcription start site region 964 42 bp downstream
Tssr30347 transcription start site region 30347 1830 bp downstream
Tssr30348 transcription start site region 30348 1810 bp downstream
Tssr30349 transcription start site region 30349 1798 bp downstream
Tssr30350 transcription start site region 30350 1754 bp downstream
Tssr30351 transcription start site region 30351 1730 bp downstream
Tssr30352 transcription start site region 30352 1680 bp downstream
Tssr30353 transcription start site region 30353 1661 bp downstream
Tssr30354 transcription start site region 30354 1646 bp downstream
Tssr30355 transcription start site region 30355 1627 bp downstream
Tssr30356 transcription start site region 30356 1573 bp downstream
Tssr30357 transcription start site region 30357 1518 bp downstream
Tssr30358 transcription start site region 30358 1400 bp downstream
Tssr30359 transcription start site region 30359 1374 bp downstream
Tssr30360 transcription start site region 30360 1344 bp downstream
Tssr30361 transcription start site region 30361 1019 bp downstream
Tssr30362 transcription start site region 30362 1003 bp downstream
Tssr30363 transcription start site region 30363 861 bp downstream
Tssr30364 transcription start site region 30364 789 bp downstream
Tssr30365 transcription start site region 30365 754 bp downstream
Tssr30366 transcription start site region 30366 701 bp downstream
Tssr30367 transcription start site region 30367 662 bp downstream
Tssr30368 transcription start site region 30368 638 bp downstream
Tssr30369 transcription start site region 30369 634 bp downstream
Tssr30370 transcription start site region 30370 625 bp downstream
Tssr30371 transcription start site region 30371 598 bp downstream
Tssr30372 transcription start site region 30372 588 bp downstream
Tssr30373 transcription start site region 30373 535 bp downstream
Tssr30374 transcription start site region 30374 521 bp downstream
Tssr30375 transcription start site region 30375 508 bp downstream
Tssr30376 transcription start site region 30376 472 bp downstream
Tssr30377 transcription start site region 30377 446 bp downstream
Tssr30378 transcription start site region 30378 424 bp downstream
Tssr30379 transcription start site region 30379 407 bp downstream
Tssr30380 transcription start site region 30380 328 bp downstream
Tssr30381 transcription start site region 30381 311 bp downstream
Tssr30382 transcription start site region 30382 256 bp downstream
Tssr30383 transcription start site region 30383 245 bp downstream
Tssr30384 transcription start site region 30384 236 bp downstream
Tssr30385 transcription start site region 30385 211 bp downstream
Tssr30386 transcription start site region 30386 189 bp downstream
Tssr30387 transcription start site region 30387 95 bp downstream
Tssr30388 transcription start site region 30388 76 bp downstream
Tssr30389 transcription start site region 30389 54 bp downstream
Tssr30390 transcription start site region 30390 1 bp upstream
Tssr30391 transcription start site region 30391 20 bp upstream
Tssr30392 transcription start site region 30392 38 bp upstream
Tssr30393 transcription start site region 30393 55 bp upstream
Tssr30394 transcription start site region 30394 75 bp upstream
Tssr30395 transcription start site region 30395 100 bp upstream
Tssr30396 transcription start site region 30396 149 bp upstream
Tssr30397 transcription start site region 30397 166 bp upstream
Tssr30398 transcription start site region 30398 241 bp upstream
Tssr30399 transcription start site region 30399 288 bp upstream
Tssr30400 transcription start site region 30400 773 bp upstream
Tssr30401 transcription start site region 30401 793 bp upstream
Tssr30402 transcription start site region 30402 892 bp upstream
Tssr30403 transcription start site region 30403 932 bp upstream
Tssr34352 transcription start site region 34352 1419 bp upstream
Tssr34353 transcription start site region 34353 1413 bp upstream
Tssr34354 transcription start site region 34354 1362 bp upstream
Tssr34355 transcription start site region 34355 1265 bp upstream
Tssr34356 transcription start site region 34356 584 bp upstream
Tssr34357 transcription start site region 34357 519 bp upstream
Tssr34358 transcription start site region 34358 460 bp upstream
Tssr34359 transcription start site region 34359 385 bp upstream
Tssr34360 transcription start site region 34360 340 bp upstream
Tssr34361 transcription start site region 34361 283 bp upstream
Tssr34362 transcription start site region 34362 270 bp upstream
Tssr34363 transcription start site region 34363 245 bp upstream
Tssr34364 transcription start site region 34364 230 bp upstream
Tssr34365 transcription start site region 34365 204 bp upstream
Tssr34366 transcription start site region 34366 136 bp upstream
Tssr34367 transcription start site region 34367 within coordinates
Tssr34368 transcription start site region 34368 49 bp downstream
Tssr34369 transcription start site region 34369 74 bp downstream
Tssr34370 transcription start site region 34370 88 bp downstream
Tssr34371 transcription start site region 34371 142 bp downstream
Tssr34372 transcription start site region 34372 905 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory