rs223761524 SNP Detail

Summary

• ID
  rs223761524
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41037746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTATTGGC TGTTGGCTGG
  GTAACGTTGT CTGGCTTCGC TCTCGCAGCT CGGGCTCTGG CTGGCAGCGC GCGCGGGCAA
  CGCCCCGCCC ACCTCGCCCC ACACTTCCCT GCTCTCACAG CCCCAACGCT TTCAGCCTGG
  GGAGTGTAAG GGAAGGGCGG GGCTGAAGAA AAATAGAGTG TGCGTGGGGC GGGGGGGGGG
  K
  GGGCCGAGCC GGCTGTGCGC GTGCGTACTC GCGCGTATGG GCGGAGCGCC GTCAGGGCGC
  GTGCGCGGGC CCTGGGACGC CACGCGCTGG GCTCTTTTTA GCAACCCCTC CCTGCTGCGC
  GCGCGTGCGC CCAGAAGCGG CTTCTCTCTG AGACGGCTGG TTCGCGTCTG TGACGACGCA
  CGGCGGAGGC CGCAATAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	JF1/MsJ	NZW/LacJ	QSi3/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
ss357674161	MGP_WTSI_3_40887233	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	JF1/MsJ	NZW/LacJ	QSi3/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
rs223761524					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357674161	MGP_WTSI_3_40887233	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41037746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13116	CpG island 13116	within coordinates
Gm64404	predicted gene, 64404	25 bp upstream
Pgrmc2	progesterone receptor membrane component 2	303 bp upstream
Rr397653	regulatory region 397653	117 bp downstream
Rr575891	regulatory region 575891	within coordinates
Rr575892	regulatory region 575892	239 bp distal
Rr575893	regulatory region 575893	36 bp proximal
Tssr28988	transcription start site region 28988	118 bp upstream
Tssr33071	transcription start site region 33071	363 bp upstream
Tssr33072	transcription start site region 33072	287 bp upstream