rs223764489 SNP Detail

Summary

• ID
  rs223764489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:166083107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGTCATG ATGATAGGAT
  CGGGTCAGTC GCAGGCAGAA GAGAGCAAAT GGCTGCAAGA AGAAAAAAGT TTGTTTCCTC
  TGGGGCATCC ACCAGCTCCA GGAGGGTGCG GTAGGGTGGG GTGAGATCAA GAGACTAGGA
  AAATGGGATC CAGCTTAAAA TAGCCAAAGC AAATCTGAAA CGAGAGAAAA GACATGCAAG
  R
  AGGAAGAAAG ACAAATACCC CCTCTTCTTT TACTCTCAGA ATGAAATTAT CAATTGCCTG
  AGTTCTTTCC CCATGGCAAA TGATAGGCCC TAACACTGCT CTTGCCCCCA GCTGGGATGA
  GGTGGGGGTG GGGGTGGGGT GGCATCCTCA GTAGAGTTAG CCTCTTATCT TGGCTGCTCT
  GAGTTCATCC CTCCCACATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352259890	MGP_WTSI_1_168185669	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223764489					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352259890	MGP_WTSI_1_168185669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166083107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi965	CpG island 965	556 bp distal
Ildr2	immunoglobulin-like domain containing receptor 2	within coordinates
Rr422555	regulatory region 422555	1335 bp distal
Rr422556	regulatory region 422556	1405 bp distal
Rr422557	regulatory region 422557	109 bp distal
Rr422558	regulatory region 422558	56 bp proximal
Tssr9868	transcription start site region 9868	1448 bp downstream
Tssr9869	transcription start site region 9869	1382 bp downstream
Tssr9870	transcription start site region 9870	1368 bp downstream
Tssr9871	transcription start site region 9871	1289 bp downstream
Tssr9872	transcription start site region 9872	1055 bp upstream