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rs223766384 SNP Detail
Summary
  • ID
    rs223766384
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr5:5743307 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAAAAGGGTG GTGGTAGGGT
    AGACTAGAGA GAAGAAGGTT GCAAGCAGTG GGGTGGTTAA CTGGGGCTTT AGGTAATCAA
    GTACTGAGGG TTGAAGTGGG GGCAGGAGTC TGAATTTTAT TTCACCTACA GTGATGGGCG
    ATAATTAAAT GTGGGTCAGA ATAAGTTTTT CTACTTAAAA ACAAACAAAC AAACAAACAA
    W
    CTGCCTGAAG AGTAAACACT GACACCAATC CTGCTTCACA GGATAGTGAA GATAATAAAT
    GGAATTCTCC CCGACCACAG GAAAAATAAA ATCTCTTTAT CTCCCTATGT TATTTTCAGA
    ACAAGATTTT TAGGGCATAA TTTTCAACAA GTTTCAGCTG AGGCTGAACA CGGGACGCAG
    AGGTAATTAA GGACACTGAA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss363869338 MGP_WTSI_5_5693307 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223766384 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss363869338 MGP_WTSI_5_5693307 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:5743307 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi15524 CpG island 15524 307 bp proximal
D5Mit417 DNA segment, Chr 5, Massachusetts Institute of Technology 417 942 bp distal
Gm40262 predicted gene, 40262 within coordinates
Rr607034 regulatory region 607034 140 bp proximal
Rr607035 regulatory region 607035 735 bp proximal
Rr607036 regulatory region 607036 1261 bp proximal
Steap2 six transmembrane epithelial antigen of prostate 2 within coordinates
Tssr50064 transcription start site region 50064 717 bp downstream
Tssr50065 transcription start site region 50065 962 bp downstream
Tssr50066 transcription start site region 50066 1129 bp downstream
Tssr50067 transcription start site region 50067 1173 bp downstream
Tssr50068 transcription start site region 50068 1192 bp downstream
Tssr50069 transcription start site region 50069 1252 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory