rs223774353 SNP Detail

Summary

• ID
  rs223774353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71147067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGAGCC AGGCTGGGAG
  TGGCGGCGCA CGCCTTTAAT CCCAGCACTC TGGAGGCAGA GGCAGGCAGA TTTCTGAATT
  TGAGGCCAGC CTGGTCTACA GAGTGAGTTC CAGGACAGCT AGAACTACAA CAAAGAAACC
  TTGTCTTTAA AAAAAACCTT GGGCTGGTGA GATGGCTCAG TGGGTTAGAG CACCCGACTG
  Y
  TCTTCCGAAG GTCCAGAGTT CAAATCCCAG CAACCACATG GTGGCTCACA ACCATCCGTA
  ACAAGATCTG ACTCCCTCTT CTGGAGTGTC TGAAGACAGC TACAGTGTAC TTACATATAA
  TAAATAAATC TTTAAAAAAA AAAAAAAAAA AAACCTTACT ACAGAAAATT AGCTTATGAT
  AAAATACTTC ATTTATTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ
ss375104761	MGP_WTSI_8_73218316	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ
rs223774353					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375104761	MGP_WTSI_8_73218316	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71147067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20485	CpG island 20485	1005 bp proximal
Gm64347	predicted gene, 64347	within coordinates
Rr368548	regulatory region 368548	1125 bp upstream
Rr400910	regulatory region 400910	862 bp upstream
Rr664886	regulatory region 664886	1772 bp distal
Rr664887	regulatory region 664887	333 bp distal
Rr664888	regulatory region 664888	639 bp proximal