rs223778426 SNP Detail

Summary

• ID
  rs223778426
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:75827910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAACTCA TTGAGTTCTT
  CCTACCTCTG CCTTCCAAGA GCTGGGTTTA AAGATATGTA CTACCACACC TGGTGAGTCC
  ACTTTGTTTT TCGAGTGCTA GGATTACAGA CACACACCAC CATGTCTGTT TTACATGGGC
  TCCAACTCAG GTCTTTACTG ATTGACCTAT CTCTTCAGCC CCAACACTTC CATATTTAAT
  K
  AGGATGAAAT GGGCAGAGCT GGGATAAAGC TGATACGCTC TGAGTAACGA TACTTGGAGA
  CTGGAGGCAA ATGCCTGGCT TCGTGTTTTC TCTTCTAGCT TCACTTACTG TGAGTGCACT
  TATTGGTATG CAAGACCACA GGGCTCAGTG TGGGGAGACA GCTCCCTCCT TCCATTTTTG
  TAAGGTTTTT ACTTCTGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375183009	MGP_WTSI_8_77625181	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223778426					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375183009	MGP_WTSI_8_77625181	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:75827910 () rs orientation: forward

Symbol	Name	Function Class
Hmox1	heme oxygenase 1	693 bp downstream
Tssr78063	transcription start site region 78063	1394 bp downstream
Tssr78064	transcription start site region 78064	1333 bp downstream
Tssr78065	transcription start site region 78065	1311 bp downstream
Tssr78066	transcription start site region 78066	1266 bp downstream
Tssr78067	transcription start site region 78067	1233 bp downstream
Tssr78068	transcription start site region 78068	1195 bp downstream
Tssr78069	transcription start site region 78069	1144 bp downstream
Tssr78070	transcription start site region 78070	1099 bp downstream
Tssr78071	transcription start site region 78071	1045 bp downstream
Tssr78072	transcription start site region 78072	1030 bp downstream
Tssr78073	transcription start site region 78073	960 bp downstream
Tssr78074	transcription start site region 78074	906 bp downstream
Tssr78075	transcription start site region 78075	897 bp downstream
Tssr78076	transcription start site region 78076	852 bp downstream
Tssr78077	transcription start site region 78077	757 bp downstream
Tssr81820	transcription start site region 81820	689 bp upstream