rs223785633 SNP Detail

Summary

• ID
  rs223785633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109738747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCACAA GGTAAGTGCT
  ATTCCAAAAA TAGTTGCCCC AGCAAACTCT ATTGCTTAAA ACTTGCAATT AAGTTTACTG
  ACAGAAAGCC CAGTGTACAG AATTACATAC TATAGGAACA GCAGAACAAA CAGGAGAAGA
  AGAGAAAAAC TAGGTCAGAG GTCAGAAAAC ACACCTACAG GCATGGTACG CGGTAGTCAG
  Y
  GTTCCTCAGA GTCTGAGGTT GTTGCACGGA CAGTGGACAC ACAGAAATCC TGGGAGCAGA
  TGATTTCTCA TGCAAGCAGG ACAGCAGACA GACAAATGTG AAAGCCATCA TGCAAAGGCA
  GTTAACTTTG AAAATGGCGC CCAGCGCTGA GATTCCGAAT AAATCGGACT CTTACCATCT
  GAGACTGACT TCTCGGACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458393	CHEV_10_109339942	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223785633					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109738747 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr224236	regulatory region 224236	853 bp proximal
Tssr99236	transcription start site region 99236	928 bp downstream
Tssr99237	transcription start site region 99237	944 bp downstream
Tssr99238	transcription start site region 99238	966 bp downstream
Tssr99239	transcription start site region 99239	989 bp downstream
Tssr99240	transcription start site region 99240	1025 bp downstream
Tssr99241	transcription start site region 99241	1066 bp downstream
Tssr99242	transcription start site region 99242	1126 bp downstream