rs223788545 SNP Detail

Summary

• ID
  rs223788545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104436648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTACATAT TATATAGTTT
  AAACAGCACA AAAGGGGGAA TTCTGACACC CCTTCTACAG TTCTAACTTC AGAAGAACTA
  TATTTCATTT TTCTTTCATT TCAACTTCAT TGACATTTAA TTGACATACT GTTTATTTAA
  TATTTATAGT GTATAATTTG CTGGGTTTTG GCATATGGAT ATGTGTGCAC CTCTGACACC
  R
  TAACCCTAAC CATGTAAGAA ATGCATTACC CTCCCTCACT CCTAAATTTT CCCATGCCCT
  TCTACGATCC ATCCATCACT CCTTCACCCT CCACTGCTAC CCATGGGAAG CTCCAGGCTA
  TTCTGTGTTG ACAGGGATTC GTTTGCAGAG TCTTAAGAGT TTTATAGAGA TGAAGTAGCA
  TGTCTCCTGA ACTTCTTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320861090	CHEV_3_104333255	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223788545					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104436648 () rs orientation: forward

Symbol	Name	Function Class
Rr582535	regulatory region 582535	1414 bp distal