rs223793668 SNP Detail

Summary

• ID
  rs223793668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33195481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAATGC TGACCATAGC
  TTTTGCTTTA TAATGTTTTC AAGTTAGGTT TGGCAAAAGA GATATGTGAG CTTTGCTGCA
  AGCCCTGGTG TGCTGTCCCA GGAGCACACG TCACAGCTGG AACAAATGGA CAGTCTTATA
  GTCACATTTT GTCTCATCTT CCAAAGTGAA ATCAAGCCTT CAGAGACTAT TCTAGACCAT
  Y
  TAAGTTTCCA CAGCATTCTT TCTTAAAATA TTCTGAAAAT TCAGTTAAAA TTATTTTGGA
  GGGTGTGTCA ATTCACCAGA TTGTTTATTC AGTTTTGCAT TCCCAAGAAC ATATTTTGGG
  GAAAAAAAAA ACCACAAAAA TCCCCAAAAC AAAACATCAT GGAAAGTTTT TAATAATTTG
  TATTAGGTAT TCAACTATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357482686	MGP_WTSI_3_33040254	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223793668					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357482686	MGP_WTSI_3_33040254	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33195481 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13064	CpG island 13064			1001 bp proximal
Pex5l	peroxisomal biogenesis factor 5-like			Intron
				Noncoding-Transcript-Variant
Rr575054	regulatory region 575054			724 bp proximal
Rr575055	regulatory region 575055			1740 bp proximal
Tssr32953	transcription start site region 32953			1653 bp downstream
Tssr32954	transcription start site region 32954			1676 bp downstream
Tssr32955	transcription start site region 32955			1693 bp downstream
Tssr32956	transcription start site region 32956			1792 bp downstream
Tssr32957	transcription start site region 32957			1839 bp downstream
Tssr32958	transcription start site region 32958			1867 bp downstream
Tssr32959	transcription start site region 32959			1895 bp downstream
Tssr32960	transcription start site region 32960			1943 bp downstream
Tssr32961	transcription start site region 32961			1962 bp downstream