rs223794380 SNP Detail

Summary

• ID
  rs223794380
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:35723683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGAGGCT GTTGGATGGG
  GAGGAGGAGA GGCAGAGAAA GTTTCGCAAC ATTAAATGAA AAGAACCCCA AAAGATGCTA
  TAAAGCATAA CACAAAACTG CAAAATAAAC AACTTCATTG CAGAGGAGTT AGGAATCAGT
  GAGTGCATTT TAAAACATCC CTGTTAGTTG CTCCTGAGAA ACTGTTTCTT TTACAGTAGT
  K
  AAAATGGTTT TAAAAACAAA AGACATTCCT TTGACAGCAT GGACATAAGC CTTTGAAGAA
  ATCTCAACTT CCAAACCATT AAACCATCGT AATGAACCAC TTAAAAGGGG TATCATAATA
  AACTACTTAA AAGGGCCCTG GGAAGCCAGT GCCGCCCCAC TTTCTCCAGC CTAATGAGTC
  CTAACTTGCC TTATGCAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382990233	MGP_WTSI_11_35646358	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223794380					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382990233	MGP_WTSI_11_35646358	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:35723683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2730	CpG island 2730	1328 bp proximal
Rars1	arginyl-tRNA synthetase 1	within coordinates
Rr402482	regulatory region 402482	1515 bp upstream
Rr445140	regulatory region 445140	243 bp distal
Rr445141	regulatory region 445141	472 bp proximal
Rr445142	regulatory region 445142	1138 bp proximal
Rr445143	regulatory region 445143	1367 bp proximal
Rr445144	regulatory region 445144	1640 bp proximal
Rr445145	regulatory region 445145	1732 bp proximal
Tssr3462	transcription start site region 3462	1518 bp downstream
Tssr3463	transcription start site region 3463	1601 bp downstream
Tssr107407	transcription start site region 107407	405 bp downstream
Tssr107408	transcription start site region 107408	1636 bp downstream
Tssr107409	transcription start site region 107409	1662 bp downstream