rs223798950 SNP Detail

Summary

• ID
  rs223798950
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135161356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC CCCCTGGGCC GGCACTCTTA
  R
  GGCAGAGGCT TTCCTTGACC TCCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321352221	CHEV_4_134989960	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223798950					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135161356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	within coordinates
Gm69862	predicted gene, 69862	within coordinates
Rcan3	regulator of calcineurin 3	202 bp upstream
Tssr39615	transcription start site region 39615	25 bp downstream
Tssr43991	transcription start site region 43991	176 bp upstream