rs223802402 SNP Detail

Summary

• ID
  rs223802402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17768330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAACTTA AATTGATGAT
  TATAGCTGTA TTTTAAGAAT TTTCTTGGAC TCCTTGCTAC ATTCTCACTT TGAATAGTTT
  ACTTATACTA GGCCCCATCC AAATTATATG TAAATATCCA GTCTTTTCTT CTATATCTCC
  ACAATTAAAT AAGATAAAAA ACCAAGATAA CTGAATTCAT TTTAAAATCA TGGCTACTAG
  Y
  ATCAAATGTG GTTCTAGTCT TACTTCCTAG CAATACTGCT ACAGGCTATT ACTCTATTCC
  TTGAGGACAA GTTATTTCTT TTTGTCCTCA AGCCTCCATC ATATTCATTT TTCTCATAGT
  GGTGAAGTCC CTTACTCGCT GATTAAGCAG CAGGAAATAG AACACTTTCA CAATCCACTT
  CCCCTCACCT GGTCTACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320673562	CHEV_3_17614166	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223802402					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17768330 () rs orientation: forward

Symbol	Name	Function Class
Gm56811	predicted gene, 56811	within coordinates
Tssr32670	transcription start site region 32670	482 bp downstream