rs223808771 SNP Detail

Summary

• ID
  rs223808771
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164721778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTGAGT GCAGTGGGCC
  CGGAGAGCCC GGGCGGAGCG GCCTCTAGGG TCCCTTCGCT GCTGCCGCTG CCGCCGTCGC
  CACCGCCTTT GTGTCGGGCT CCGACTCAGA GTCGCCTCAG CCCGGGGGCG GGAGCGCGCG
  GCAGGGCGGG GGGCGGAGCC CGGGCGAAGG GCCGGCGCGC GCGCGCCAGA CTTCCCGCCC
  M
  CGCTGGGCTT GCGGGAGGGG CAGGCGGGAG CGCGCTGGGA GCGGGGTGGG GGAGGGTTCC
  CGTCTGTGCG CCTGCGTGGC TCCGCCCACC AGAGCCGGGG CGTTATGATT GGTACTCTGG
  TATGTGATCC CGCCCATGTT CCTCCAATCC CGGAATCGGA TGCATTTTCT AGTCCGAGTT
  CCGCTGCTTG CGCAGATACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356442866	MGP_WTSI_2_164705358	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223808771					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356442866	MGP_WTSI_2_164705358	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164721778 () rs orientation: forward

Symbol	Name	Function Class
4930445K14Rik	RIKEN cDNA 4930445K14 gene	within coordinates
Cpgi12676	CpG island 12676	within coordinates
Gm75548	predicted gene, 75548	59 bp upstream
Pcif1	phosphorylated CTD interacting factor 1	Intron
Rr397480	regulatory region 397480	347 bp downstream
Rr397481	regulatory region 397481	within coordinates
Rr569748	regulatory region 569748	1944 bp distal
Rr569749	regulatory region 569749	1239 bp distal
Rr569750	regulatory region 569750	1174 bp distal
Rr569751	regulatory region 569751	491 bp distal
Rr569752	regulatory region 569752	70 bp distal
Rr569753	regulatory region 569753	455 bp distal
Rr569754	regulatory region 569754	within coordinates
Tssr21683	transcription start site region 21683	460 bp downstream
Tssr21684	transcription start site region 21684	158 bp upstream
Tssr21685	transcription start site region 21685	187 bp upstream
Tssr27592	transcription start site region 27592	54 bp upstream