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rs223809130 SNP Detail
Summary
  • ID
    rs223809130
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:40160432 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGGTATGGA TGTGTCATGT
GAAGCAACTG TGCCTTGGGA CTATGAACGT TTGGAAAAGA AATTCCTGTA GTTTTAGTCT
CATTGGTTGT TGTAACCCAA GACTATAGGG GCCATGCTAA ATTGTTAAAG ATTAGCACCT
TCAAGACAGA CTATGATGAG ATAGTACATA AAATATCACC CAGAAAAAAA TCCTCGGTGT
Y
TTGGAGAAAA CATTTTCATG TGATGACCGT CAAGAACAGG ACCAACAGTA CAATAGAAAT
GGCCAGATCT TAGGAGAGAA ACTGAATGTG TTGCAAATGG AAGAGTTGGA AAAAATGATT
CCAACTACTG GGAGGAGCCC AGAATATTAT AAATGAATCC CAGATAATTG GACACTGAGT
CATTTCTGGT GAAGAACCTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ss398169448 MGP_WTSI_17_39986486 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
rs223809130 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398169448 MGP_WTSI_17_39986486 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:40160432 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
AY036118 cDNA sequence AY036118 within coordinates
Cpgi9159 CpG island 9159 710 bp distal
Gm26917 predicted gene, 26917 753 bp downstream
Rn18s 18S ribosomal RNA 1340 bp distal
Rn18s-rs5 18s RNA, related sequence 5 1339 bp downstream
Tssr144613 transcription start site region 144613 1949 bp downstream
Tssr144614 transcription start site region 144614 1927 bp downstream
Tssr144615 transcription start site region 144615 1846 bp downstream
Tssr144616 transcription start site region 144616 1756 bp downstream
Tssr144617 transcription start site region 144617 1729 bp downstream
Tssr144618 transcription start site region 144618 1712 bp downstream
Tssr144619 transcription start site region 144619 1669 bp downstream
Tssr144620 transcription start site region 144620 1646 bp downstream
Tssr144621 transcription start site region 144621 1532 bp downstream
Tssr144622 transcription start site region 144622 1516 bp downstream
Tssr144623 transcription start site region 144623 1486 bp downstream
Tssr144624 transcription start site region 144624 1351 bp downstream
Tssr144625 transcription start site region 144625 1334 bp downstream
Tssr144626 transcription start site region 144626 1305 bp downstream
Tssr144627 transcription start site region 144627 1273 bp downstream
Tssr144628 transcription start site region 144628 1114 bp downstream
Tssr144629 transcription start site region 144629 1040 bp downstream
Tssr144630 transcription start site region 144630 1031 bp downstream
Tssr144631 transcription start site region 144631 934 bp downstream
Tssr144632 transcription start site region 144632 824 bp downstream
Tssr144633 transcription start site region 144633 777 bp downstream
Tssr148065 transcription start site region 148065 1757 bp upstream
Tssr148066 transcription start site region 148066 1680 bp upstream
Tssr148067 transcription start site region 148067 1580 bp upstream
Tssr148068 transcription start site region 148068 1482 bp upstream
Tssr148069 transcription start site region 148069 1299 bp upstream
Tssr148070 transcription start site region 148070 1235 bp upstream
Tssr148071 transcription start site region 148071 1209 bp upstream
Tssr148072 transcription start site region 148072 881 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory