rs223810865 SNP Detail

Summary

• ID
  rs223810865
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86881558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTACAC AGCAAGCAAA
  GTAAAGGGGC TGGCTGAACT CAGGAAGGAA ACTGTGGCCT AGCCATAGAT AGCAGTGCGT
  GGCATTGGGG CCTCCTGAGG AGTGTTTCAT CCACTTGTAA AGTAAGACTC ATCTGTGAGT
  CATGGGACTG ACTTAGTGGG TCACTCAGAA TTTCTTAAAA TTTTAGTGTG TGTGTGTGTG
  W
  GTGTGAGAGA GAGATGGGGG GGGGGAGGGA GGGAGAGGAA AGGGAGAGAG AGGGAGGAAG
  AGAGCCTGCT TATCTGTGCT CGAAGCTACT CAATCAAAGA GGCCTTGCGA TCGCTTAGAA
  TTGGAGTTAC AGAGGTTATG AGTGGCCCGG TGTGGGTGCT GGGAATTGAA TCTTGGTCCT
  CTGTAAGAGC AGCAAGTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386769117	MGP_WTSI_12_88175734	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223810865					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386769117	MGP_WTSI_12_88175734	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86881558 () rs orientation: forward

Symbol	Name	Function Class
Gm40491	predicted gene, 40491	988 bp upstream
Gm51955	predicted gene, 51955	within coordinates
Gm53734	predicted gene, 53734	1797 bp upstream
Gm56533	predicted gene, 56533	within coordinates
Rr403427	regulatory region 403427	1814 bp upstream
Tssr3902	transcription start site region 3902	986 bp upstream
Tssr114479	transcription start site region 114479	611 bp downstream
Tssr117129	transcription start site region 117129	174 bp upstream