rs223812902 SNP Detail

Summary

• ID
  rs223812902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88360606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGAAGAA GCTGAGGGCC
  CTGTGCCCGT CTCCTGTTGG GAGGCAATGA CAAGGAGAGG ATGAGAAGGA GCTGACCACT
  GAGGCAAAGG TGGGGGAGGG GTGGCAGGCC TCAGCAGCTG CCCCCCTTCA CTGGCGGCAC
  CCCCCTCCAT TTCCTTCATC CTTCAACAGC AGGGCATCGG AACTTTGTGG ATTGAGTCCC
  Y
  AGAAGTGAAA AGTTCCAAAG ACAGGGTAAT GGTAGCTTGG GTACTGTTGG TGGTGTTGGG
  GGGAGAGCCT GCTCAAGACA CAGACAGAAA ATGAAGTGAG GCTAGAAGAT GCAGTCTCAG
  GCCTGGGGGG ATGCAGTGAA GCAGGATGGG AGGGGGAGAG CTGACAGGTA GACACAGGAA
  GGGGTTCTCA GCCACAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358796211	MGP_WTSI_3_88257221	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223812902					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358796211	MGP_WTSI_3_88257221	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88360606 () rs orientation: forward

Symbol	Name	Function Class
Rr367457	regulatory region 367457	99 bp upstream
Rr579760	regulatory region 579760	775 bp distal
Rr579761	regulatory region 579761	53 bp proximal
Sema4a	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	within coordinates
Tssr932	transcription start site region 932	1579 bp downstream
Tssr29951	transcription start site region 29951	1652 bp upstream
Tssr34017	transcription start site region 34017	898 bp upstream
Tssr34018	transcription start site region 34018	89 bp downstream
Tssr34019	transcription start site region 34019	106 bp downstream
Tssr34020	transcription start site region 34020	120 bp downstream
Tssr34021	transcription start site region 34021	174 bp downstream
Tssr34022	transcription start site region 34022	1521 bp downstream
Tssr34023	transcription start site region 34023	1533 bp downstream
Tssr34024	transcription start site region 34024	1843 bp downstream
Tssr34025	transcription start site region 34025	1874 bp downstream