rs223819872 SNP Detail

Summary

• ID
  rs223819872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7458831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTAGCCT GGGCTACTTT
  GTATTAAAAT TTTTTTTCAC TATTTGATGA CAACCATAGC TAAAAATTTA ATTCTCTGAG
  TGCTAGCTAG ACTGATTCCT CAATACTTAA CATTTGATCT TCAGCACAAA AGGCCAACTT
  CTGAAACCTA GACTTTTATC AGAAATTTGG AAATTAGGAC TAGGCCAACC AAACAGTAAG
  Y
  AGTGATTAAA GGCAAGTCAC TAAGTTATAG AAAAGCCACC GTTTATCTGG AAAATAGCCC
  AAAATGCAAA AATTTGAAAG AGAAATGCTG GTGGTTTAAA CAGAACCAGG GTTCAAAATA
  TGCTGCCTCA TTCCCTTTAT CTCCAGAAAA CTTCCTCCCA TACCATTTAT CCAAATGGCC
  ATTCCCATGG AGAATTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401693227	MGP_WTSI_19_7555956	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223819872					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401693227	MGP_WTSI_19_7555956	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7458831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10559	CpG island 10559	1026 bp proximal
Gm58988	predicted gene, 58988	within coordinates
Rr543685	regulatory region 543685	109 bp proximal
Rr543686	regulatory region 543686	1726 bp proximal
Rtn3	reticulon 3	within coordinates
Tssr5428	transcription start site region 5428	1515 bp downstream
Tssr5429	transcription start site region 5429	1593 bp downstream
Tssr5430	transcription start site region 5430	1686 bp downstream
Tssr5431	transcription start site region 5431	1822 bp downstream
Tssr157986	transcription start site region 157986	870 bp downstream
Tssr157987	transcription start site region 157987	1619 bp downstream
Tssr157988	transcription start site region 157988	1671 bp downstream
Tssr157989	transcription start site region 157989	1733 bp downstream
Tssr157990	transcription start site region 157990	1746 bp downstream
Tssr157991	transcription start site region 157991	1775 bp downstream