rs223820885 SNP Detail

Summary

• ID
  rs223820885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3676968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTATTT TGTGCATCTG
  GGTATTTTGC TTGCAAGTAT ATGATGTGCT CATGAGATCA GCAGAGGGCA TTTGGACCCC
  TGAGATTGGA GTTATGGATA GTTGTGAGTC ACCATGGAGG AACTGGCAAT TGAACCTGGG
  TTTTATGGAA GAGAAGCCAA TCAGTACTCT TAAGCACTGA GCCCTTCCCC CTCTCTCCTT
  Y
  CTTCCTCCCT CCCTCCCTTT CTTAAAATGT AGCCCTGGTT GCCCTGGAAC TCCTGCTGTC
  ATTCTCAGGA ACACTGTCCA CTTCTTTGAG ACACACGTGT AATCCCGAGT CAGGAAGATC
  TCAAGTTCAA GGCCAACTTG AACTACATAG GAAGCTCCAG GTCAACCAGA GTTACATAAA
  ACTATCCAGG ATCAAACGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373512050	MGP_WTSI_8_3626968	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223820885					SNP	C	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373512050	MGP_WTSI_8_3626968	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3676968 () rs orientation: forward

Symbol	Name	Function Class
Pcp2	Purkinje cell protein 2 (L7)	1423 bp upstream
Rr658952	regulatory region 658952	1124 bp proximal
Tssr80207	transcription start site region 80207	1985 bp upstream
Tssr80208	transcription start site region 80208	1954 bp upstream
Tssr80209	transcription start site region 80209	1926 bp upstream
Tssr80210	transcription start site region 80210	1756 bp upstream
Tssr80211	transcription start site region 80211	1715 bp upstream
Tssr80212	transcription start site region 80212	1680 bp upstream
Tssr80213	transcription start site region 80213	1671 bp upstream
Tssr80214	transcription start site region 80214	1420 bp upstream
Tssr80215	transcription start site region 80215	1388 bp upstream