rs223823471 SNP Detail

Summary

• ID
  rs223823471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32734027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGAAAGT TCCCCAACTA
  GGACCACACG TGACCTCCTC CTGAAAGTAG TTCCGACCGC GGCTCATGTA TCCTTCCACC
  TCGCCTTTGA GCCCTCCCAG GCCTGCTCGC CCCGCCCACT CGCTGGCTGC AGCTTCCGAA
  CGTCCCATAC TCCACACCCG GGCTCAGTAA CCGGGTCCTC GAACATGCAA GGTCCGACAG
  R
  GTCAGAACCT GGCCATCGCG ATCCAATTCT GCCGGGTTTT CATAGCGGCC ACGAAGTGGG
  GATTGGGGGT GGGGGCTTAG CTCTTTGAAG ACTGAGCTTG GCTGTGATCC GGTAGACCCA
  CCGCTGCGGG GAGCTGCGGG TCTCATCACC GGGCGGTGGA GGGGTGTGTG TGAGGTGCAC
  TCTATTCACG GAGACCCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402294746	MGP_WTSI_19_32831117	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223823471					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402294746	MGP_WTSI_19_32831117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32734027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10762	CpG island 10762	within coordinates
Gm36566	predicted gene, 36566	within coordinates
Gm56634	predicted gene, 56634	150 bp upstream
Gm56643	predicted gene, 56643	within coordinates
Gm58496	predicted gene, 58496	926 bp upstream
Gm58497	predicted gene, 58497	1077 bp upstream
Pten	phosphatase and tensin homolog	950 bp upstream
Rr370485	regulatory region 370485	1993 bp downstream
Rr370486	regulatory region 370486	within coordinates
Rr405924	regulatory region 405924	827 bp downstream
Tssr5485	transcription start site region 5485	857 bp upstream
Tssr5486	transcription start site region 5486	1053 bp upstream
Tssr5487	transcription start site region 5487	1099 bp upstream
Tssr155991	transcription start site region 155991	1706 bp downstream
Tssr155992	transcription start site region 155992	949 bp upstream
Tssr155993	transcription start site region 155993	977 bp upstream
Tssr155994	transcription start site region 155994	1020 bp upstream
Tssr155995	transcription start site region 155995	1698 bp upstream
Tssr158898	transcription start site region 158898	201 bp upstream
Tssr158899	transcription start site region 158899	695 bp downstream
Tssr158900	transcription start site region 158900	742 bp downstream