rs223826464 SNP Detail

Summary

• ID
  rs223826464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88185290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAATTCCA TCCTGTGACA
  GGGGAGGCGT TCCAGTGATT CATTGGGGCT CACCTCATTC TTTTGGCAGC ACCTCTGGAG
  ACTAGTGCTG GGCAGGCAAT GGAGTGTGTT CAAATTCCAC ATAAACCCTT ATGCATGCCT
  TTGGGGTAAA CCCCCTCCCC CCTGAGCTAG AGTCATTATG CCCAGTCTCT TGAGTGTTAC
  R
  AGTCTCGAGG AAGGAGGGAC TGCCCTGATG GAAGGATCCA GACAGCTCGG TGGAAACCTA
  GGAATTGGGA TTGACCATGG GGAATGGCTG GGGTTTTGCT GGGCTTCCTG ATGGCAGCCC
  ACTTGTGCCT CTTGATGTCA GGAAAGCGAG CTGCTACGGT TGAAGGCCTT TGTTCTCTTT
  GGGAAGCTTA CAAAAGTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	C57BL/6J	DBA/1J	FVB/NJ	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss350399107	MGP_WTSI_1_90154143	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	C57BL/6J	DBA/1J	FVB/NJ	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs223826464					SNP	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399107	MGP_WTSI_1_90154143	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88185290 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	1311 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	1542 bp upstream
Tssr7959	transcription start site region 7959	1564 bp upstream
Tssr7960	transcription start site region 7960	1579 bp upstream
Tssr7961	transcription start site region 7961	1626 bp upstream
Tssr7962	transcription start site region 7962	1780 bp upstream
Tssr7963	transcription start site region 7963	1808 bp upstream
Tssr7964	transcription start site region 7964	1823 bp upstream
Tssr7965	transcription start site region 7965	1859 bp upstream