rs223829376 SNP Detail

Summary

• ID
  rs223829376
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:115350317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTGTGA GACTATGCCA
  GGGCATTTAC AAAGCTGACA AAGATACTAT AGGACTGTGA GGAGGAGAAA ATAAGTGGAC
  ATTCAAAATT ATGATTTCAG AACAAGTCTA AAGATTAATC TTTCTGTCAT CTCAGTCCCA
  GTGCAGCTTC TTCCTCCTCC AGGGTTTCTG ACACACTCAG GATGTGGTTA CAACACTGTT
  C
  CTTGCACAGA TAGATTGCAG AGTTCTCTGC TGTCAGGCTG CTGAGCTGCA TGTAGGCTGT
  GCTGGAGGAT GTGTCTACAG TCAATGTGGC CTTGCCCTTG AACTTCTCAT TATAATAAGT
  ACTACCACTT CCAGGAAAAA TCTCTCCAAT CCACTCAAGG CCCTGTCCAG GCCTCTGTTT
  TACCCACTGC ATCCAGTAGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J
ss387457499	MGP_WTSI_12_116624908	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J
rs223829376					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387457499	MGP_WTSI_12_116624908	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:115350317 () rs orientation: forward

Symbol	Name	Function Class
Gm19331	predicted gene, 19331	149 bp upstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv1-62-1	immunoglobulin heavy variable 1-62-1	10 bp downstream