rs223833101 SNP Detail

Summary

• ID
  rs223833101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157120544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCAGTGGA GTGACTGGGT ATATCAACCA CTCTCCAGGG
  CAGGACTCCA TGCTTAGTTT GTTTTTTACT TTAGAAAGAG GAAAAATAGA GCATGAGTTG
  R
  GTGTGTAGGG AGTTGGGGGA GGATATGGAA GGTGTTGGGG GAAGGAAATG AATATGATCA
  AAATATATTG TATGAAATTT TCAAAAAAAA AAAATCAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320585264	CHEV_2_157104360	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223833101					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157120544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	197 bp proximal
Mroh8	maestro heat-like repeat family member 8	within coordinates
Rpn2	ribophorin II	474 bp upstream
Rr397441	regulatory region 397441	124 bp upstream
Rr568459	regulatory region 568459	within coordinates
Rr568460	regulatory region 568460	915 bp proximal
Tssr21228	transcription start site region 21228	374 bp upstream
Tssr21229	transcription start site region 21229	402 bp upstream
Tssr21230	transcription start site region 21230	441 bp upstream
Tssr21231	transcription start site region 21231	654 bp upstream
Tssr27165	transcription start site region 27165	888 bp downstream
Tssr27166	transcription start site region 27166	895 bp downstream
Tssr27167	transcription start site region 27167	932 bp downstream