rs223833350 SNP Detail

Summary

• ID
  rs223833350
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:132571569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCGGGC TCCCAGTCTT
  TTTTTAAGAA ATGCATCCAA GGGAAGCCAG GGCTGGAGAG CGAGCTGAGA GGGGCGAGAC
  CCCCCAGAGA GGGGAGCATA ACCACGCAAT CACAAGCGGA GACAGAGGTT GCCCGAGGAA
  AGGAGGAAGG GAAGGAGGAG GACGCTGAAG CAGTTGTGGG ATTTTTTTTT TTCGGTCTTC
  R
  AGGGGGGGAG GAGGAGAAAA AGATGAAAGA AGAGAAGAAT TGCAAAGCCT GGCGCGTGCC
  ACCGACCCCC TCCTCACATA CACATGCACG CACGCACACA CACAAATTGT AGATCTCCCC
  CCACCCCCAG TTCCAGAGGT CACCCTTCTT CCAAAAAAAT TTAAGATAAA ATTATAAAGG
  GGGAGGGGGT GAGTCAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366765885	MGP_WTSI_5_133018600	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	G	A	A	A	G	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223833350					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	G	A	A	A	G	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366765885	MGP_WTSI_5_133018600	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:132571569 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Cpgi16710	CpG island 16710	390 bp distal
Cpgi16711	CpG island 16711	within coordinates
D5Mit324	DNA segment, Chr 5, Massachusetts Institute of Technology 324	1658 bp distal
Gm28616	predicted gene 28616	1705 bp upstream
Rr621808	regulatory region 621808	1470 bp distal
Rr621809	regulatory region 621809	369 bp distal
Rr621810	regulatory region 621810	within coordinates
Rr621811	regulatory region 621811	604 bp proximal
Rr621812	regulatory region 621812	1215 bp proximal
Rr621813	regulatory region 621813	1716 bp proximal
Tssr53594	transcription start site region 53594	709 bp upstream
Tssr53595	transcription start site region 53595	516 bp upstream
Tssr53596	transcription start site region 53596	344 bp upstream
Tssr53597	transcription start site region 53597	406 bp downstream
Tssr53598	transcription start site region 53598	433 bp downstream
Tssr53599	transcription start site region 53599	633 bp downstream