rs223838206 SNP Detail

Summary

• ID
  rs223838206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:128062131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACTCTGC ATGGGAGGGG
  GGGCCGGCGG AGGGGGGTAG GAAACGCCAA TTAAGCGGTT GGAAGATGCG ATTCATTCAT
  TAGATTGGGC TTCAGGTGAA ACCCGACAGC TATACCGCGA AAAATAGCAC TCAAAAGACA
  GGTAACAAAT AGCGGGAGCA GTCATCCTTT TATCCAACTC CGATGGTCCG GACGCACAAA
  Y
  GGATTAGGAA GCGGCATCAC TAACTGAGCG AAAGGAGTTT AACTGGTTGT CAGGTTGGCG
  CAGTAAGCGC TCAAAGTAAA CTTCGTTATC CAAGGGACAG AGGTGGTGCA CGGTGGCGAA
  AAGCAATCAC TTTGGCACTT CAAAAGCAGC AGGCGCTAGG CGGGTGTTTC TGACAGCGTG
  GGGCACGTGG GGCAGAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373107336	MGP_WTSI_7_135603921	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223838206					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373107336	MGP_WTSI_7_135603921	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128062131 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19791	CpG island 19791			within coordinates
Gm32816	predicted gene, 32816			1401 bp upstream
Rr368466	regulatory region 368466			1190 bp upstream
Rr656040	regulatory region 656040			204 bp distal
Rr656041	regulatory region 656041			55 bp proximal
Rr656042	regulatory region 656042			792 bp proximal
Rr656043	regulatory region 656043			1683 bp proximal
Rr656044	regulatory region 656044			1919 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1			Intron
				Noncoding-Transcript-Variant
Tssr2414	transcription start site region 2414			785 bp downstream
Tssr69425	transcription start site region 69425			1530 bp upstream
Tssr75109	transcription start site region 75109			681 bp upstream
Tssr75110	transcription start site region 75110			761 bp downstream
Tssr75111	transcription start site region 75111			906 bp downstream
Tssr75112	transcription start site region 75112			920 bp downstream
Tssr75113	transcription start site region 75113			982 bp downstream
Tssr75114	transcription start site region 75114			1142 bp downstream
Tssr75115	transcription start site region 75115			1172 bp downstream
Tssr75116	transcription start site region 75116			1223 bp downstream