rs223842700 SNP Detail

Summary

• ID
  rs223842700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:37655175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATAACGA CCTCTGAAAA
  GGCATCGAGG GGTAAAATCC CTTAAAACAA AATAACCTAA TATTCTTGTT TACACCCAGA
  AATGACTGTG GAGAAAAGCA CAAATGAGGG AGTCAAAGCA AGATTAATAT AATGTATATC
  CTCAAAAAAA AATGAGAGGA GAGAGTGGGG AGAGAAAGTA TATCCTTAGC TATGAAAGGG
  Y
  TTTATCTAAT TATGTAAAGT GCAATGAGAC TAGAAGATAG GATGTCTGGT TGGAGGTATG
  GAAAATAAAG CTTCAAACGT GCCTTGGACC TTAGTGCGGT TCTACATGCT TGGAATCCCA
  GTATTTTGGA AGGAGAAACA GGATTGCCAG TTTGAGTTCA AGACCAGCCC AGGCTATATA
  ACAAGAGCCT ATATAACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403285884	MGP_WTSI_X_35919475	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223842700					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403285884	MGP_WTSI_X_35919475	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:37655175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22681	CpG island 22681	1210 bp distal
Cul4b	cullin 4B	within coordinates
Gm61874	predicted gene, 61874	within coordinates
Rr3993	regulatory region 3993	1426 bp proximal
Rr8561	regulatory region 8561	174 bp distal
Rr394940	regulatory region 394940	within coordinates
Tssr163215	transcription start site region 163215	1964 bp upstream
Tssr163216	transcription start site region 163216	1939 bp upstream
Tssr163217	transcription start site region 163217	1743 bp upstream
Tssr163218	transcription start site region 163218	1627 bp upstream
Tssr163219	transcription start site region 163219	1403 bp upstream
Tssr163220	transcription start site region 163220	1364 bp upstream
Tssr163221	transcription start site region 163221	1336 bp upstream
Tssr163222	transcription start site region 163222	1274 bp upstream
Tssr163223	transcription start site region 163223	1251 bp upstream
Tssr163224	transcription start site region 163224	290 bp downstream