rs223844750 SNP Detail

Summary

• ID
  rs223844750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15196247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAAGTCCG GGCTCTGAGC
  CTTTTCGCTC AGGTACTCCC GGAAGATGCG CACGGCGTAG CGGGTGGCCA GCCTGGTGTT
  CTCGCTCAGC CGGGCCCGCT CGGGGCGCTG CAGCACGTCG GGGTCCAGCT CCGCGCTGTC
  CCCCGGCGGC CCCGCGCGGG CCCGGGGCGC CAACAGTCGT GGCGGCGCCT CGGGCTCCAG
  Y
  GCGGCGCTCT GGTCCATATG GATCATATGG ACCGGCTCCG GCTCCAGCTC CTCCCCGGCC
  GAGTCCTCCG GCTCCAGGGG CTCTTCCCAG TCCATCCCCA TCTCCTCCTC TTCCTCCTCC
  TCCTCGTCCT CCTCCAGCCC CCCACCTCCG TCCTCCTCCT CGTCCCCCGT TATCTGCACC
  TCCTGGATCT CGTCCTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325532712	CHEV_18_15221699	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223844750					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15196247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9734	CpG island 9734	within coordinates
Gm58434	predicted gene, 58434	814 bp upstream
Kctd1	potassium channel tetramerisation domain containing 1	within coordinates
Rr534350	regulatory region 534350	418 bp proximal
Tssr152510	transcription start site region 152510	370 bp downstream
Tssr152511	transcription start site region 152511	439 bp downstream
Tssr152512	transcription start site region 152512	887 bp downstream
Tssr152513	transcription start site region 152513	928 bp downstream
Tssr152514	transcription start site region 152514	954 bp downstream
Tssr152515	transcription start site region 152515	1008 bp downstream
Tssr152516	transcription start site region 152516	1121 bp downstream
Tssr152517	transcription start site region 152517	1153 bp downstream
Tssr152518	transcription start site region 152518	1173 bp downstream
Tssr152519	transcription start site region 152519	1231 bp downstream
Tssr152520	transcription start site region 152520	1257 bp downstream