rs223845606 SNP Detail

Summary

• ID
  rs223845606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81202099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGATCC ACAGAAGGAA
  GTGGATACCT AAGTCTTGGG TTGGGGAGAA TGCTCTGGGA TCACTGGTGG CATCGCTGAA
  CATGCAGAGC CCAGGGCCTG CTCATTCTGC TAGTGCATCC TGTGTATCTC ATGACAATAA
  ACAGCAACAA CCAATCTCAT AGCTCAGTCA ACCCTTTACA GTCTGTATAG GCGGCGCTCC
  R
  CTTGGGTTCC TGTTTTCTCA CCAGACATCA CCTCCCCCTC TCTGGTCACC AACATGCTAA
  GCTTGCTCCA GTCAGGGTCC TGGCCAACTT ACCCAGGACA CTGCTGTGGG GTGGGAGCCC
  AAGCCACAGG CCCTCCCTGC TTGCAGTTCT GGCTCTGTAG GCTTTGGTCC TTACTCTCTG
  ACTCACCTGC ACCCTGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381035178	MGP_WTSI_10_80829010	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223845606					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381035178	MGP_WTSI_10_80829010	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81202099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	821 bp distal
Fzr1	fizzy and cell division cycle 20 related 1	614 bp downstream
Mfsd12	major facilitator superfamily domain containing 12	40 bp downstream
Rr435631	regulatory region 435631	within coordinates
Rr435632	regulatory region 435632	1042 bp proximal
Tektip1	tektin bundle interacting protein 1	445 bp upstream
Tssr94744	transcription start site region 94744	1964 bp downstream
Tssr94745	transcription start site region 94745	1893 bp downstream
Tssr94746	transcription start site region 94746	1851 bp downstream
Tssr94747	transcription start site region 94747	1839 bp downstream
Tssr98595	transcription start site region 98595	1406 bp upstream
Tssr98596	transcription start site region 98596	464 bp upstream
Tssr98597	transcription start site region 98597	440 bp upstream
Tssr98598	transcription start site region 98598	422 bp upstream