rs223851601 SNP Detail

Summary

• ID
  rs223851601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4299194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACACCT GCCAGTGCTG
  AGCAGAATGA GTAGCTGGGT AGGGGCAGGT GGGTGATCTC TAAACTGCAA AACTGTGCTG
  TTCTTGTGAG GTCACTGCCT GCACCTTGTG CCCTGGCTGT CTTCCTGTGC CCATAAAGGA
  AGTGGCTTGT TGCCCCCTCC CAGACATGCT CCCTTTTCGC CCTCCTGTGG ATTCTCCCAT
  Y
  AGCCATTTGG TCTCACTCTT AAGGCCAGTT GAAGATGGTC CCTTACGGTT TCTCAAATTA
  GGTTAGTGAT GTGAAATGCT CCTGTCCCTA CCTCCTTCCC GAGCCCCATC CCTGCAGAAG
  GCAACTGCTG GGTTTCCAAT TCTTTTCCAA GTTCATTTTG TTTATCCTGC TCCGCAATCC
  CCTGAGCCAG AAGTGGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324213508	CHEV_13_4248441	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223851601					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4299194 () rs orientation: forward

Symbol	Name	Function Class
Akr1c19	aldo-keto reductase family 1, member C19	834 bp downstream
Gm61344	predicted gene, 61344	within coordinates
Marcksl1-ps4	MARCKS-like 1, pseudogene 4	170 bp downstream
Rr283540	regulatory region 283540	394 bp distal
Tssr118223	transcription start site region 118223	510 bp upstream