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rs223856516 SNP Detail
Summary
  • ID
    rs223856516
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:69300476 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCGGGGCCA CGCGGTTCCC
CACGGCCCAC GTGGCCCCCA CCCCCCCCAA GGGAGGGGGG ATTTCGGGGG TTGCCCGTGA
CGTGGCTACT TGCGCAGCGG AAGCGGTGTG TGTAAGGGGG GGGGGGTCCT TCGGGAGGGA
GAGGAGGGCG GGGCCCAACA GGCAGTGACA TCACCCCTGT CCCACTCTCA CCGCCTACTC
Y
CTTAAAGAAC ACAGAACCCG TTTCACTTCC TCCTTCACGC CACCCCCCTC CCCTTTACTC
CTTTCCCGTC GAAGCTGAAC CCACAACAGG CACAGTACTC CCCTTTCCTA GTCACGTTCC
CTTTAATCCT AGCTTTGCCT TCTCAAATCT TAGAGCCCAG AAGCTGCTTC CCTGCGCATA
CCCCAGGTCC CGGCAGGTAG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383783470 MGP_WTSI_11_69223152 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223856516 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss383783470 MGP_WTSI_11_69223152 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:69300476 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi3128 CpG island 3128 within coordinates
Gm72923 predicted gene, 72923 1668 bp upstream
Gm72933 predicted gene, 72933 104 bp downstream
Kdm6b KDM1 lysine (K)-specific demethylase 6B within coordinates
Rr247028 regulatory region 247028 within coordinates
Rr369256 regulatory region 369256 224 bp upstream
Rr402670 regulatory region 402670 754 bp downstream
Rr402671 regulatory region 402671 within coordinates
Tssr3543 transcription start site region 3543 926 bp upstream
Tssr102456 transcription start site region 102456 706 bp downstream
Tssr102457 transcription start site region 102457 346 bp downstream
Tssr102458 transcription start site region 102458 24 bp upstream
Tssr102459 transcription start site region 102459 44 bp upstream
Tssr102460 transcription start site region 102460 77 bp upstream
Tssr102461 transcription start site region 102461 120 bp upstream
Tssr102462 transcription start site region 102462 148 bp upstream
Tssr102463 transcription start site region 102463 901 bp upstream
Tssr102464 transcription start site region 102464 1175 bp upstream
Tssr102465 transcription start site region 102465 1294 bp upstream
Tssr102466 transcription start site region 102466 1451 bp upstream
Tssr102467 transcription start site region 102467 1669 bp upstream
Tssr102468 transcription start site region 102468 1705 bp upstream
Tssr102469 transcription start site region 102469 1747 bp upstream
Tssr108664 transcription start site region 108664 1819 bp upstream
Tssr108665 transcription start site region 108665 1088 bp upstream
Tssr108666 transcription start site region 108666 490 bp upstream
Tssr108667 transcription start site region 108667 239 bp upstream
Tssr108668 transcription start site region 108668 228 bp upstream
Tssr108669 transcription start site region 108669 205 bp upstream
Tssr108670 transcription start site region 108670 81 bp upstream
Tssr108671 transcription start site region 108671 234 bp downstream
Tssr108672 transcription start site region 108672 718 bp downstream
Tssr108673 transcription start site region 108673 746 bp downstream
Tssr108674 transcription start site region 108674 790 bp downstream
Tssr108675 transcription start site region 108675 957 bp downstream
Tssr108676 transcription start site region 108676 1002 bp downstream
Tssr108677 transcription start site region 108677 1046 bp downstream
Tssr108678 transcription start site region 108678 1062 bp downstream
Tssr108679 transcription start site region 108679 1361 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory