rs223857559 SNP Detail

Summary

• ID
  rs223857559
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23733414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATCTCTG TTAAAGGACA
  TCTAGGTTCT TTCCAGCTTC TGGGTATTAT AAATAAGGCT GCTATGAACA TAGTGTAGCA
  TGTGTACTTG TTACATGTTG AAGCATCTTC TGGTTATATG CCCAGGAGTG GTATTGCTGG
  GTCCTCAGGT AGTACTATGT GCAATTTTCT GAGGAACTGC CAAACTGATT TCCAGAGTGG
  W
  TGCACCATCT TGCGATCCCA TCAACATTGG AGGAGTGTTC CTCTTTCTCC ACATCCTAGC
  CAGCATCTGC TGTCACCTGA GTTTTTGATC TTAGCCATTC TGACTGGTGT GAGGTGGAAT
  CTCAGGGTTG TTTTAATTTG CATTTCCCTG ATGACTAAGG ATGCTAAACA TTTCTTTAGG
  TGTTTCTCAG CCATTCTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	SPRET/EiJ
ss397836671	MGP_WTSI_17_23651407	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	SPRET/EiJ
rs223857559					SNP	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397836671	MGP_WTSI_17_23651407	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23733414 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	1014 bp upstream
Rr329666	regulatory region 329666	987 bp proximal