rs223873676 SNP Detail

Summary

• ID
  rs223873676
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32904794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCAGGAA CAAAGAAACT
  CTAAAGGAAG GAGAACCGTG GGAAACTCAC TGTTCCTGAG AGAAGGTGCC TGGCTAAGAG
  TAGGTTAAAG AGAACTCTAA GCCTGAACCT GGCTGCTTAT TTCTAGATAA CCAGCTATCT
  GAAGCCAAAA AGTCAGAGTG ATCCTGTTGG CTTCAGACAT GGGGTTTTTC AGGTAACATC
  W
  CCTGGCAGTT TCATTCAGGA ATTTTGGGTC TCTCCCTCTC TCCCTCTCTC CCTCTCTCCC
  TCCTCCTCCT CCTCCTCTAC CTCCACCTCC TCTTCCTCCA TATTACTGCC TATTTCCACC
  CCATGGATCT CTCCTCCTAC AAACAGCCTT CATTATTCAT ATCCCTGGTC CATTATGCCT
  GATGGCCCCA ACCTTCTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325362849	CHEV_17_32822765	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223873676					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32904794 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f15	cytochrome P450, family 4, subfamily f, polypeptide 15	within coordinates
Rr339615	regulatory region 339615	within coordinates
Rr341335	regulatory region 341335	1807 bp proximal
Tssr143733	transcription start site region 143733	224 bp downstream
Tssr143734	transcription start site region 143734	205 bp downstream
Tssr143735	transcription start site region 143735	177 bp downstream
Tssr143736	transcription start site region 143736	143 bp downstream
Tssr143737	transcription start site region 143737	273 bp upstream