rs223874308 SNP Detail

Summary

• ID
  rs223874308
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120882212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGACAGT CCGAGCGCCG
  CCGCCGCTGC TCCGGCCCTT GCCGGCCCCG CTCGCCCTCT CCCCGCCGCG GATGGACTCG
  GATCTTCCGG GCCTAAATCC CCCTTCAGCT GCCTAAAGGA GCCGCCGCCA TCGCGCTGTG
  ACGTCACTTC CCCTAGCAAC CCAAGGGGGC GGGGCCACCG TGCTCGGGGG CGGGGCTTGG
  M
  TACTTGATGG ATTGCGCAGT CGCAACCAGG CCTGTTTCTC TGTCCCAGTG TCCACCGTTC
  CCGCAGGATG ACTCCAGCTG GTCTCTTTGG TCTTCCCATT TGTCTCCAAT AGAAGTCCGA
  GGAAGCTAAG CCATGTGTGG TAAGAAATGC CTGTAGTTCC AGCCCTTGGG AGTTCGAGAC
  CAGCCTGGGC TATAGCGACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384952596	MGP_WTSI_11_120852700	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223874308					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384952596	MGP_WTSI_11_120852700	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120882212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	within coordinates
Csnk1d	casein kinase 1, delta	56 bp upstream
Gm53204	predicted gene, 53204	57 bp upstream
Gm57327	predicted gene, 57327	within coordinates
Rr403207	regulatory region 403207	within coordinates
Rr461864	regulatory region 461864	305 bp distal
Rr461865	regulatory region 461865	458 bp distal
Rr461866	regulatory region 461866	306 bp distal
Rr461867	regulatory region 461867	201 bp distal
Rr461868	regulatory region 461868	67 bp distal
Rr461869	regulatory region 461869	within coordinates
Rr461870	regulatory region 461870	49 bp proximal
Rr461871	regulatory region 461871	1222 bp proximal
Rr461872	regulatory region 461872	1410 bp proximal
Tssr106388	transcription start site region 106388	811 bp downstream
Tssr106389	transcription start site region 106389	within coordinates
Tssr106390	transcription start site region 106390	26 bp upstream
Tssr112430	transcription start site region 112430	349 bp upstream
Tssr112431	transcription start site region 112431	312 bp upstream
Tssr112432	transcription start site region 112432	291 bp upstream
Tssr112433	transcription start site region 112433	280 bp upstream
Tssr112434	transcription start site region 112434	108 bp upstream
Tssr112435	transcription start site region 112435	47 bp upstream