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rs223874525 SNP Detail
Summary
  • ID
    rs223874525
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr2:163308350 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCTGATCTT CACATGTATG
    CCATGGTGTG CTCGCAAAAC ACACACACAC ACACACACAG AGACACACAC ACACACACAA
    TTTAATTTAA AAGTTGAAGT TAAAAAGTTA AATCAACACA CAGAAAGGAA CACAGCAAAC
    TCCGGAATGT AGACTCCATT ATCTCCAGTG CCCTTTAATT CGCTTGTTTA CACATGGACT
    S
    TGTGTAGGTA ACAGTGGCAC GAACTATTCT CTGACTGCAA TCTGGTACCC AGACAGTGAC
    GGATGCACGT GGAAGCTCAG ATGCTCCCAA AGCCTGGGGT TTACCACCAA GGGACAACAG
    ACGCTTGGAA GGATGACATG AGACTACTTC CATAGGCGAC CCAGGCTCTG AGTTGTTTCT
    TTACTTTCTC TAAAGGAGCC                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320603312 CHEV_2_163292166 CHEVERUD SCREENING_POP f SNP G C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs223874525 SNP G C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:163308350 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr374196 regulatory region 374196 1197 bp downstream
Rr569384 regulatory region 569384 1484 bp distal
Rr569385 regulatory region 569385 276 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory