rs223874525 SNP Detail

Summary

• ID
  rs223874525
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163308350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGATCTT CACATGTATG
  CCATGGTGTG CTCGCAAAAC ACACACACAC ACACACACAG AGACACACAC ACACACACAA
  TTTAATTTAA AAGTTGAAGT TAAAAAGTTA AATCAACACA CAGAAAGGAA CACAGCAAAC
  TCCGGAATGT AGACTCCATT ATCTCCAGTG CCCTTTAATT CGCTTGTTTA CACATGGACT
  S
  TGTGTAGGTA ACAGTGGCAC GAACTATTCT CTGACTGCAA TCTGGTACCC AGACAGTGAC
  GGATGCACGT GGAAGCTCAG ATGCTCCCAA AGCCTGGGGT TTACCACCAA GGGACAACAG
  ACGCTTGGAA GGATGACATG AGACTACTTC CATAGGCGAC CCAGGCTCTG AGTTGTTTCT
  TTACTTTCTC TAAAGGAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603312	CHEV_2_163292166	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223874525					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163308350 () rs orientation: forward

Symbol	Name	Function Class
Rr374196	regulatory region 374196	1197 bp downstream
Rr569384	regulatory region 569384	1484 bp distal
Rr569385	regulatory region 569385	276 bp proximal