rs223875024 SNP Detail

Summary

• ID
  rs223875024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13335963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTTCATT AGAGCTTCCC
  TTGTCACGGA AGCCAAAGCA TTGGGGGCAT TTTCTCTTCC ATTATTCTAG TGTTTAAAAT
  GCATAGGACT TTAAAAAACG TATGTAATTT GTGTGTATGT GTCCCAACGT GTGTGTGTGT
  GGAGATCAGA AAACAACTGT ATTGTCGGTC CTCTTTACCC ACCATTTGGA TTGTACTTGA
  Y
  GGTAGCTACC TTTACCTGTA AAGCCATCCC ACTGGCCCCA AAATGAAAAA ATCCTCAACT
  AACACTGGAC AGTCCAGTTG ACCTCAAGAA TTGGTATAGG CTTGCCTGGC CTGGAACTTG
  CTATATAGAC CAGGATGACC TTGAATCTAG ATTACTGCCT GACCCTGACT TCCAAGTGCT
  GGGAGTAAAA GTATGTGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505815	CHEV_8_13285963	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223875024					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13335963 () rs orientation: forward

Symbol	Name	Function Class
9530085L11Rik	RIKEN cDNA 9530085L11 gene	within coordinates
Cpgi20111	CpG island 20111	1115 bp proximal
Dcun1d2	defective in cullin neddylation 1 domain containing 2	within coordinates
Rr659903	regulatory region 659903	917 bp proximal
Rr659904	regulatory region 659904	1437 bp proximal
Rr659905	regulatory region 659905	1860 bp proximal
Tssr76388	transcription start site region 76388	1924 bp upstream
Tssr80437	transcription start site region 80437	1851 bp downstream