rs223876101 SNP Detail

Summary

• ID
  rs223876101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72437919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCCTCT AGCGGTGACT
  GTGGGATGCG TGGCTCTTTA TGGAACCTAT TAAAAACTGA AAAGTTGCAC TCGGGAAGCC
  AGCCTGTGTG ACACCGGTAG TGAAGTTATT TTAAAGACAT CTCGGTTCTC AACTTCCTTT
  TCTTAAGGTC TTTAGCAGGT CCTAGTTACC TTTCTTTGTT GATTCTCCCC CTCCCCCCCC
  Y
  CCCCGAATGT GGCAATGTGA GGCCATCACT CTTCGGGTTT AAAAAAAAAA AATTAGAAAA
  AGGGGTCTGG GCCACTTTTC CCATTGTCTT TTTATATCAT CTTCCCCGTG AATACAGAAT
  TATAAATATG CATTCTGGAA CACAGTCTGG ATCCTCAGGA GGAAACTGTA TTTTGCAAGG
  GTGTCCTTGC CTCCACCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	CAST/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	PWK/PhJ	ST/bJ	WSB/EiJ
ss378020690	MGP_WTSI_9_72378444	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	CAST/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	PWK/PhJ	ST/bJ	WSB/EiJ
rs223876101					SNP	T	T	T	T	T	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378020690	MGP_WTSI_9_72378444	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72437919 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	within coordinates
Cpgi22017	CpG island 22017	831 bp proximal
Rfx7	regulatory factor X, 7	1603 bp upstream
Rr401508	regulatory region 401508	within coordinates
Rr401509	regulatory region 401509	982 bp upstream
Rr682766	regulatory region 682766	161 bp distal
Rr682767	regulatory region 682767	216 bp distal
Rr682768	regulatory region 682768	within coordinates
Rr682769	regulatory region 682769	513 bp proximal
Rr682770	regulatory region 682770	1113 bp proximal
Rr682771	regulatory region 682771	1314 bp proximal
Tssr86008	transcription start site region 86008	1091 bp upstream
Tssr86009	transcription start site region 86009	1296 bp upstream
Tssr86010	transcription start site region 86010	1547 bp upstream
Tssr86011	transcription start site region 86011	1577 bp upstream