rs223880878 SNP Detail

Summary

• ID
  rs223880878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109740087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTCAAAAT CATGGACTAG TCACTTGTGA
  CCAAGCAAAA CTCCCTTCCC AGATGGCTCC AGAGGAGATC GCTACCGGGA AAGAGTTTGA
  GTTTCTCTCT TTTATTTTTT TCTCCCTTTC CTCCATTATT TTGAAAATAA TCCTGTCTGT
  R
  TAAAAGGAAG TCACCTGGAC CGACTTATAG AGGAACTTTC TAACAAAATG TGTTTCTCCG
  AAGGGGCTTT ATTGAATTTG TCACCCTAGA TACTCTAATG TGACAATGTT TTGGCGTGGT
  TTTCTGAAAT AATTGCAAAT TCCTTCCTGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458405	CHEV_10_109341282	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223880878					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109740087 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr212647	regulatory region 212647	714 bp proximal
Rr224236	regulatory region 224236	286 bp distal
Rr225672	regulatory region 225672	1515 bp proximal
Tssr99236	transcription start site region 99236	397 bp upstream
Tssr99237	transcription start site region 99237	381 bp upstream
Tssr99238	transcription start site region 99238	355 bp upstream
Tssr99239	transcription start site region 99239	326 bp upstream
Tssr99240	transcription start site region 99240	299 bp upstream
Tssr99241	transcription start site region 99241	260 bp upstream
Tssr99242	transcription start site region 99242	204 bp upstream