rs223881571 SNP Detail

Summary

• ID
  rs223881571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83007847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAATCCA CTAAGGTCGG
  TCAAGACAAA AGCCGAGAGC AACCACAGGC ACTGTAGCTC ATCCCTCAAA TCCAAGTGCT
  GAGAAGGACT TCTGGAGACA GCCACCACTC CCACTGCTGT GGGTGTCTCA AGCTTTTGCC
  TTACTTCCTC TGGCCCGCAA GTGTCCACAG CACAGCTAGC TCACAGCTAG CTCGCAGTTG
  R
  CTTCAAGCAG CTGAGGGAAC GTGCTCAGTA GAGCAGCTTA GGTAAGTGAG CCATCCTCCA
  TGGCCGCCGC CTCTGTCGCA ACCTCTCTGT CCCAGTGCCT ACCAAGAATG CATTCTGCGG
  GCTGTGGGAT GATGTGGGGC TGCCAGTACA ACCCAGAGCT CTAAGGACAA CCCTGGCTGC
  TTTGGTGCTT CTCTAGGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323766848	CHEV_11_82930523	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223881571					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83007847 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	within coordinates
LxMm-9c11	LINE repeat x, subfamily 9, member c11	1310 bp distal
Rr237031	regulatory region 237031	1447 bp distal
Rr247350	regulatory region 247350	within coordinates
Slfn1	schlafen 1	within coordinates
Tssr103652	transcription start site region 103652	332 bp downstream
Tssr103653	transcription start site region 103653	224 bp downstream
Tssr103654	transcription start site region 103654	171 bp downstream
Tssr103655	transcription start site region 103655	139 bp downstream
Tssr103656	transcription start site region 103656	103 bp downstream
Tssr103657	transcription start site region 103657	53 bp downstream
Tssr103658	transcription start site region 103658	22 bp downstream
Tssr103659	transcription start site region 103659	within coordinates
Tssr103660	transcription start site region 103660	1308 bp upstream
Tssr109644	transcription start site region 109644	429 bp upstream