rs223882365 SNP Detail

Summary

• ID
  rs223882365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:73949779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGTGGGG CACGTGAGGA
  AAGACTGCAA TTAGATGACC GATGATAGGC ATGGCTGCTA GAGTCACCAC CGCAGTAAAG
  AGGAAGTATA AATAAATGTG GCCTGACATA ACCCTGCCTG CCAGAAACTC AAGGTGTGGC
  CAGCTGAACG GAGGAGCTAC AAAGTGCAAG TGTCATGAAT TCATCAGTGA AGTTCTGTTG
  Y
  CCTCCACAGT CTGCCCTCTG TTAGGATTAT TGTGCAAAGA ACTGTCACAA TAGAATTAAT
  TTTGCTTGAG GTCAATAGAG TCCTTATTAA ATGCAGTGTC TGCTAATGTC AAGAAGACAG
  GCGCCCATTT GCCTGAAGTA CTCAGACTTG CAGATTTTCC CAAGAGATTG GTCAAATGCC
  TTCCAATGAA ACTTAAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401209264	MGP_WTSI_18_73976362	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223882365					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401209264	MGP_WTSI_18_73976362	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:73949779 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10208	CpG island 10208	687 bp distal
Gm58443	predicted gene, 58443	within coordinates
Gm58445	predicted gene, 58445	202 bp upstream
Me2	malic enzyme 2, NAD(+)-dependent, mitochondrial	1259 bp upstream
Rr353118	regulatory region 353118	within coordinates
Rr405736	regulatory region 405736	978 bp downstream
Tssr153885	transcription start site region 153885	1255 bp upstream
Tssr153886	transcription start site region 153886	1222 bp upstream
Tssr153887	transcription start site region 153887	994 bp upstream
Tssr153888	transcription start site region 153888	914 bp upstream
Tssr153889	transcription start site region 153889	165 bp upstream