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rs223883700 SNP Detail
Summary
  • ID
    rs223883700
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr14:122343127 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGGGGGACA CCTACATTCT
    ACATTATCCC TCTTAGCACA AGTAGAAGCT GGGGAGACCT ACAGAGTGGC CTAGCGTGGT
    AGGTAGGAGC CTAGAGACCA CCAAAAGAAC TCAGTGGCAC AGCGAGCAGC ATGCCAGCTA
    TGGACAGTGA GATTGTCACA GGTAGAAAAA AGTAGTAATG GCAAGGTTGG AGCGGGAGCT
    R
    CGGCAGTGAA GGTCTAGTTT GGTATTATCA GAAAAATAGG TAAGGTGTGT GGGGGGTGTT
    AATCCTACCT CTTTATATTT GGAGACAGCT GCTTCCTTTT TCGACAAAGG GCGTTGTCTT
    GACTTAGCCC AAAGTTCAGT ATGTGCATGT ATTTGAGATG GTGTGCGCTG ATGGACACGC
    CTCCTTTTGT TATAAAAGTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss392814885 MGP_WTSI_14_122504937 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223883700 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss392814885 MGP_WTSI_14_122504937 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:122343127 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
A330035P11Rik RIKEN cDNA A330035P11 gene within coordinates
Cpgi6887 CpG island 6887 215 bp distal
Cpgi6888 CpG island 6888 1031 bp proximal
Gm56752 predicted gene, 56752 within coordinates
Rr296792 regulatory region 296792 within coordinates
Rr404313 regulatory region 404313 624 bp downstream
Tm9sf2 transmembrane 9 superfamily member 2 1323 bp upstream
Tssr127313 transcription start site region 127313 685 bp downstream
Tssr127314 transcription start site region 127314 572 bp downstream
Tssr127315 transcription start site region 127315 1314 bp upstream
Tssr127316 transcription start site region 127316 1350 bp upstream
Tssr127317 transcription start site region 127317 1361 bp upstream
Tssr127318 transcription start site region 127318 1404 bp upstream
Tssr130316 transcription start site region 130316 119 bp downstream
Tssr130317 transcription start site region 130317 1201 bp downstream
Tssr130318 transcription start site region 130318 1225 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory