rs223888880 SNP Detail

Summary

• ID
  rs223888880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:81017002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTCAAG GCACGTGCCC
  GCTACCTGGC CGAAAAGTAT GAGTGGGACG TTGCTGAAGC CCGCAAGATC TGGTGCTTTG
  GCCCTGATGG CACTGGCCCC AACATTCTCA CCGACATCAC CAAGGGTGTG CAGTACCTGA
  ATGAGATCAA GGACAGTGTG GTGGCTGGCT TCCAGTGGGC TACTAAGGAG GTAAGTGACT
  Y
  AGCATTGGTG ACCCTGTGTT CTGAGGGGCT GCTGGTGTCT AACTTCCAGC TCTTCACAGG
  GCGCTCTCTG TGAGGAAAAC ATGCGTGGTG TGCGGTTTGA TGTTCATGAT GTGACCCTGC
  ATGCTGATGC CATTCACCGG GGAGGTGGCC AGATCATCCC CACAGCACGC CGCTGCCTGT
  ATGCCAGTGT GCTGACCGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381032084	MGP_WTSI_10_80643913	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223888880					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381032084	MGP_WTSI_10_80643913	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81017002 () rs orientation: forward

Symbol	Name	Function Class
4930442H23Rik	RIKEN cDNA 4930442H23 gene	1437 bp downstream
Cpgi1951	CpG island 1951	1379 bp proximal
Dapk3	death-associated protein kinase 3	1837 bp upstream
Eef2	eukaryotic translation elongation factor 2	Intron
Rr435545	regulatory region 435545	1472 bp distal
Rr435546	regulatory region 435546	980 bp distal
Rr435547	regulatory region 435547	1347 bp proximal
Tssr3283	transcription start site region 3283	1259 bp upstream
Tssr94699	transcription start site region 94699	1963 bp downstream
Tssr94700	transcription start site region 94700	1819 bp downstream
Tssr94701	transcription start site region 94701	1750 bp downstream
Tssr94702	transcription start site region 94702	1585 bp downstream
Tssr94703	transcription start site region 94703	1520 bp downstream
Tssr94704	transcription start site region 94704	1494 bp downstream
Tssr94705	transcription start site region 94705	1429 bp downstream
Tssr94706	transcription start site region 94706	1261 bp downstream
Tssr94707	transcription start site region 94707	1206 bp downstream
Tssr94708	transcription start site region 94708	1150 bp downstream
Tssr94709	transcription start site region 94709	892 bp downstream
Tssr94710	transcription start site region 94710	1232 bp upstream
Tssr94711	transcription start site region 94711	1832 bp upstream
Tssr94712	transcription start site region 94712	1888 bp upstream
Tssr98570	transcription start site region 98570	1755 bp upstream
Tssr98571	transcription start site region 98571	1389 bp upstream