rs223890699 SNP Detail

Summary

• ID
  rs223890699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151383329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGCTGAC CCAGATGAAG
  AGACAGGAAG TATCACATCG ACTAGACTGA TTTATATCAA CTTTCAGCAA GTCCAGGACT
  TTTTGGTTTT GTTTGTGGAG CTGTTGTGGT GTAGATCGCC TCTGGAGCAG TTTATAGTCC
  CTAGATTGGG ATCTGACAGA ACCAGAAACC AGATGTCACC AAAAAAAAAA ACATTAAAAG
  Y
  TTCTATGACT TACCAGAGGA TGCCTCCATA AAATAAATAC ATATGTTTTT AAGGTGTTGG
  TGGGTTGGTT TTTGATCCTG CTGTCCAACA AACTGGAGGT GTGTGCTTTC TCCAAGGTGT
  GCACCCCTAA GGTACAATTC CTCAGTCCCA GAGGGCCAGA GGGCAGGATC CAGCTTCTGA
  ATTTCTGAAT TCAGCCTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356131712	MGP_WTSI_2_151367145	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	C	C	C	T	C	T	C	T	T	C	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223890699					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	C	C	C	T	C	T	C	T	T	C	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356131712	MGP_WTSI_2_151367145	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151383329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12419	CpG island 12419	753 bp proximal
Fkbp1a	FK506 binding protein 1a	1074 bp upstream
Gm14167	predicted gene 14167	within coordinates
Rr397389	regulatory region 397389	704 bp upstream
Tssr20722	transcription start site region 20722	627 bp downstream
Tssr20723	transcription start site region 20723	611 bp downstream
Tssr20724	transcription start site region 20724	1070 bp upstream
Tssr20725	transcription start site region 20725	1098 bp upstream
Tssr20726	transcription start site region 20726	1146 bp upstream
Tssr20727	transcription start site region 20727	1250 bp upstream
Tssr20728	transcription start site region 20728	1283 bp upstream
Tssr20729	transcription start site region 20729	1410 bp upstream
Tssr26737	transcription start site region 26737	933 bp downstream
Tssr26738	transcription start site region 26738	985 bp downstream